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| About: AquaTrace takes advantage of cutting edge genetic and genomic analytical approaches to support aquaculture activity and management, as well as the protection of our marine and freshwater environments. This includes the development of forensically validated genetic tools for tracing the origin of farmed fish and to monitor genetic interactions between fish from aquaculture and their wild conspecifics. Additionally it aims at identifying the locations in fish genomes which are responsible for the physiological and life-history differences we observe between wild and cultured fish. Based on the scientific insights a risk assessment and management recommendations will be provided concerning the genetic impact of aquaculture fish on wild fish gene pools. The results and new insights emerging from AquaTrace could provide also very valuable support for the aquaculture industry, for example to guide breeding and domestication processes. Moreover AquaTrace pursues a strategy, including partnerships with related projects such as FishPopTrace (https://fishpoptrace.jrc.ec.europa.eu), which will lead to additional benefits for marine fisheries management, particularly genetic stock identification and assessment. All activities are designed such that they can contribute to Horizon 2020, the upcoming EU Framework Programme for Research and Innovation and “Blue Growth” the EU long term strategy to support sustainable growth in the marine and maritime sectors. The AquaTrace consortium includes 22 partners from across Europe encompassing diverse expertise ranging from molecular genomics to practical fish breeding. Likewise, project partners include Universities, Governmental, EU and private research institutions as well as fish breeding companies and associations. For more information visit our website https://aquatrace.eu or contact info@aquatrace.eu . | AquaTrace – Genetics and Genomics in support of AquacultureI am very pleased to send out this 3rd AquaTrace e-newsletter, highlighting recent progress and output of the project. During the last two years, AquaTrace participants have all worked hard in order to develop genetic tools and methods for identifying wild and aquaculture turbot, European sea bass and sea bream. At the same time we have been investigating the effects of interbreeding between domesticated and wild fish on key life-history traits using Atlantic salmon and brown trout as model organisms. I am very happy to say that the development of the genetic tools through DNA sequencing of new and archived wild and aquaculture samples has proceeded very well for all three species. In total we have sequenced DNA from more than 6000 specimens (using a method called ddRAD), which will be able to provide us with an excellent overview of the genetic variation in turbot, European Sea bass and sea bream for both wild and aquaculture populations. We're now in the process of translating the raw DNA data into biologically meaningful insights; a process expected to continue over the next six months period. This will eventually not only lead to an understanding of population structure and the level of domestication in the targeted species, but also release a wealth of DNA markers and tools, which can readily be implemented by the industry and lead to faster attainment of breeding goals. | ||
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| For the model species, most of the experiments with live salmon and trout under controlled conditions have taken place in Matre, Norway, which holds excellent facilities for keeping fish at various environmental settings. Again, most of the data analysis is in progress, but I would like to reveal a few of our initial insights generated by one of our dedicated PhD students, Alison Harvey from University of Bangor, Wales, and her collaborators. The main aim of Alison's work is to elucidate and quantify the genetic differences between wild, hybrid and farmed Atlantic salmon in key life-history traits. In her experiments she examined the differences in growth at low (7°C), medium (12°C) and high (16°C) temperatures for two farmed, five wild and two first generation (F1) hybrid strains/populations. Her data shows that, farmed fish (on average) outgrew the wild fish in all treatments, with hybrids displaying intermediate growth, although there were subtle differences in growth between all the strains/populations. Variation increased in the low and high temperatures. This data indicates that growth differences at varied temperatures are potentially strain/population specific. We think that these new findings have already contributed to a broader understanding of the effects of introgression between farmed and wild conspecifics, which will be very valuable for the final risk-assessment of the impact of European aquaculture on wild fish populations; a key deliverable of AquaTrace. Finally, I would like to highlight some results having emerged from the analysis of our online questionnaire on breeding practices in European aquaculture enterprises led by Hervé Chavanne representing University of Padova, Italy. This survey, based on the answers from 29 major fish breeding companies, has provided an excellent overview of the status of fish breeding in Europe. Among many other insights the survey has revealed that the implementation of selective breeding programs is an ongoing process for all target species in Europe. Except for carp and turbot, at least one new program has been initiated over the last three | years for each species. In most cases precautions are taken by the breeding companies to monitor the increase of inbreeding at each new generation. Across Europe, the number of programs using molecular tools has more than doubled since the previous survey. Growth is the most popular selected trait, followed by morphology and disease resistance. Feed efficiency is now present in seven programs encompassing all species except carp. We expect that the full data will be ready for publication soon; however, Hervé can be contacted for more information I think the whole consortium, like I, is very pleased that we now have generated and secured the majority of the raw data that will form the core of the analyses and output for the next two years. We have achieved the vast majority of our goals without major delays, which is thanks to the dedicated efforts of all consortium members. We will continue to work hard on producing more interesting insights of benefit to the scientific community, policy makers and other stakeholders, with the goal of a prosperous European aquaculture industry.
In order to subscribe to the AquaTrace e-newsletter please contact Mrs. Tine Kastrup tik@aqua.dtu.dk Einar Eg Nielsen (Image source: Port a Bheachan: Wikimedia Commons. Licensed under the Creative Commons Attribution 2.0 Generic) | ||
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